OntoChina,中国生物医学本体联合工作组

欢迎（Introduction of OntoChina）

随着我国健康医疗大数据的兴起，国内的本体研究也在提速。为了加速国内生物医学信息本体的研究，通过提高本体共享和应用促进产业健康发展，国家人口与健康科学数据共享服务平台成立了"中国生物医学信息本体联合工作组"。我们倡议有志于促进中国生物医学本体信息建设与发展的专家、学者共同参与，建立一个共享、共建的生物医学信息本体平台以促进本体建设、研究和应用。欢迎加入我们！

>>倡议书 >>申请书 >>工作章程

联系我们

联系人：王哲滕飞

联系电话： 010-69156963 010-65250541

Email： bmiccwangzhe@163.com rkjkpt@126.com

工作进展

1. Ontological modeling and analysis of experimentally or clinically verified drugs against coronavirus infection 2021-01-13
2. CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis 2020-06-12
3. 组织召开"中国生物医学本体和术语研讨会(2019)" 2019-07-19
4. BFO-zh(Basic Formal Ontology中文翻译) 公开征求意见的邀请函 2018-05-08

本体资源

Coronavirus Infectious Disease Ontology ( CIDO )
缩写: CIDO 语言: English OBO Foundry: 是描述: TThe Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment. 解析:MedPortal Ontobee
国际疾病分类码ICD10中文版 ( ICD10CN )
缩写: ICD10CN 语言: 中文 OBO Foundry: 否描述: International Classification of Diseases, 10th Edition, China (ICD10CN) 是国际疾病分类码 ICD10 的中文版本，它依据疾病的某些特征，按照规则将疾病分门别类，并用编码来表示的系统。解析: MedPortal
人类表型本体PHO中文版 ( HPCH )
缩写: HPCH 语言: 中文 OBO Foundry: 否描述: Human Phenotype Ontology China (PHCH) 是人类表型本体Human Phenotype Ontology (HPO) 的中文版，HPCH 重点翻译了 HPO 中表型相关的内容，包括：label、definition 和 comment of HPO classes。解析: MedPortal
知情同意本体中文版 ( ICOChina )
缩写: ICOChina 语言: 中文 OBO Foundry: 否描述: 知情同意本体(Informed Consent Ontology)中文版。解析: ICOChina
中国中医药学主题词表
缩写: 语言: 中文 OBO Foundry: 否描述: 《中国中医药学主题词表》是将中医药学科领域自然语言转换成规范化中医药名词术语的一种术语控制工具，是由语义相关、族性相关的中医药学术语组成的规范化动态词典。解析: 中国中医药学主题词表
Anatomical Entity Ontology ( AEO )
缩写: AEO 语言: English OBO Foundry: 否描述: AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology。解析: Ontobee
Beta Cell Genomics Ontology ( BCGO )
缩写: BCGO 语言: English OBO Foundry: 否描述: An application ontology built for beta cell genomics studies. 解析: Ontobee
Basic Formal Ontology ( BFO )
缩写: BFO 语言: English OBO Foundry: 是描述: The upper level ontology upon which OBO Foundry ontologies are built. 解析:MedPortal Ontobee
BRENDA tissue / enzyme source ( BTO )
缩写: BTO 语言: English OBO Foundry: 否描述: A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures. 解析:MedPortal
Chemical Entities of Biological Interest ( CHEBI )
缩写: CHEBI 语言: English OBO Foundry: 是描述: A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds. 解析:MedPortal Ontobee
Cell Ontology ( CL )
缩写: CL 语言: English OBO Foundry: 否描述: The Cell Ontology is a structured controlled vocabulary for cell types in animals. 解析:MedPortal Ontobee
Cell Line Ontology ( CLO )
缩写: CLO 语言: English OBO Foundry: 否描述: An ontology to standardize and integrate cell line information and to support computer-assisted reasoning. 解析:Ontobee
Human Disease Ontology ( DOID )
缩写: DOID 语言: English OBO Foundry: 是描述: An ontology for describing the classification of human diseases organized by etiology. 解析:MedPortal Ontobee
Evidence Ontology ( ECO )
缩写: ECO 语言: English OBO Foundry: 否描述: An ontology for experimental and other evidence statements. 解析:MedPortal Ontobee
Experimental Factor Ontology ( EFO )
缩写: EFO 语言: English OBO Foundry: 否描述: The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team. We also add terms for external users when requested. If you are new to ontologies, there is a short introduction on the subject available and a blog post by James Malone on what ontologies are for. 解析:Ontobee
Environment Ontology ( ENVO )
缩写: ENVO 语言: English OBO Foundry: 否描述: Ontology of environmental features and habitats. 解析:MedPortal
Epidemiology Ontology ( EPO )
缩写: EPO 语言: English OBO Foundry: 否描述: An ontology designed to support the semantic annotation of epidemiology resources. 解析:MedPortal Ontobee
Foundational Model of Anatomy ( FMA )
缩写: FMA 语言: English OBO Foundry: 否描述: The FMA is a reference ontology for the domain of human anatomy. 解析:MedPortal Ontobee
Genomic Epidemiology Ontology ( GENEPIO )
缩写: GENEPIO 语言: English OBO Foundry: 否描述: The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks. 解析:MedPortal Ontobee
Gene Ontology ( GO )
缩写: GO 语言: English OBO Foundry: 是描述: An ontology for describing the function of genes and gene products. 解析:MedPortal Ontobee
Human Phenotype Ontology ( HP )
缩写: HP 语言: English OBO Foundry: 否描述: A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease. 解析:MedPortal Ontobee
Human Developmental Anatomy, abstract 2 ( HSAPDV )
缩写: HSAPDV 语言: English OBO Foundry: 否描述: A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just heart really means heart (CS 9-20). Timing details will be added to the abstract version of the ontology in a future release. 解析:MedPortal
Information Artifact Ontology ( IAO )
缩写: IAO 语言: English OBO Foundry: 否描述: An ontology of information entities. 解析:MedPortal
International Classification of Diseases, Version 10 ( ICD10 )
缩写: ICD10 语言: English OBO Foundry: 否描述: International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva. 解析:MedPortal
International Classification of Diseases, Version 10 - Clinical Modification ( ICD10CM )
缩写: ICD10CM 语言: English OBO Foundry: 否描述: International Classification of Diseases, 10th Edition, Clinical Modification, 2011_01. 解析:MedPortal
Informed Consent Ontology ( ICO )
缩写: ICO 语言: English OBO Foundry: 否描述: An ontology of clinical informed consents. 解析:MedPortal Ontobee
Logical Observation Identifier Names and Codes ( LOINC )
缩写: LOINC 语言: English OBO Foundry: 否描述: Logical Observation Identifier Names and Codes (LOINC) 解析:MedPortal
MedlinePlus Health Topics ( MEDLINEPLUS )
缩写: MEDLINEPLUS 语言: English OBO Foundry: 否描述: MedlinePlus Health Topics; National Library of Medicine; June 14, 2008; Bethesda, MD. 解析:MedPortal
Medical Subject Headings ( MESH )
缩写: MESH 语言: English OBO Foundry: 否描述: Medical Subject Headings (MeSH); National Library of Medicine; 2011. 解析:MedPortal
Standard Metadata for Mass Spectrometry ( METADATA )
缩写: METADATA 语言: English OBO Foundry: 否描述: This is an ontology of MS metadata by modeling MS metadata fields into an ontology-based semantic framework and reusing existing ontologies. This metadata standard can be used to support additional project-specific data fields and will also serve as a paradigm for other MS projects, thus supporting further interoperability. 解析:MedPortal
microRNA Ontology ( miRNAO )
缩写: miRNAO 语言: English OBO Foundry: 否描述: An application ontology for use with miRNA databases. 解析:MedPortal Ontobee
Mammalian phenotype ( MP )
缩写: MP 语言: English OBO Foundry: 否描述: Standard terms for annotating mammalian phenotypic data. 解析:Ontobee
National Cancer Institute Thesaurus ( NCIT )
缩写: NCIT 语言: English OBO Foundry: 否描述: A vocabulary for clinical care, translational and basic research, and public information and administrative activities. 解析:MedPortal
Non-Coding RNA Ontology ( NCRO )
缩写: NCRO 语言: English OBO Foundry: 否描述: An ontology for non-coding RNA, both of biological origin, and engineered. 解析:Ontobee
Ontology of Adverse Events ( OAE )
缩写: OAE 语言: English OBO Foundry: 否描述: A biomedical ontology in the domain of adverse events. 解析:Ontobee
Ontology for Biomedical Investigations ( OBI )
缩写: OBI 语言: English OBO Foundry: 是描述: An integrated ontology for the description of life-science and clinical investigations. 解析:MedPortal Ontobee
The Ontology of Genes and Genomes ( OGG )
缩写: OGG 语言: English OBO Foundry: 否描述: A formal ontology of genes and genomes of biological organisms. 解析:MedPortal Ontobee
Ontology for General Medical Science ( OGMS )
缩写: OGMS 语言: English OBO Foundry: 否描述: An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities. 解析:MedPortal Ontobee
Online Mendelian Inheritance in Man ( OMIM )
缩写: OMIM 语言: English OBO Foundry: 否描述: Online Mendelian Inheritance in Man, OMIM (TM). McKusick-Nathans Institute for Genetic Medicine, Johns Hopkins University (Baltimore, MD) and National Center for Biotechnology Information, National Library of Medicine. 解析:MedPortal
Phenotypic quality ( PATO )
缩写: PATO 语言: English OBO Foundry: 是描述: An ontology of phenotypic qualities (properties, attributes or characteristics) 解析:MedPortal Ontobee
PRotein Ontology ( PR )
缩写: PR 语言: English OBO Foundry: 是描述: An ontological representation of protein-related entities. 解析:MedPortal Ontobee
Protein modification ( PSI-MOD )
缩写: PSI-MOD 语言: English OBO Foundry: 否描述: PSI-MOD is an ontology consisting of terms that describe protein chemical modifications. 解析:MedPortal Ontobee
Mass spectrometry ontology ( PSI-MS )
缩写: PSI-MS 语言: English OBO Foundry: 否描述: A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry. 解析:MedPortal Ontobee
Pathway ontology ( PW )
缩写: PW 语言: English OBO Foundry: 否描述: A controlled vocabulary for annotating gene products to pathways. 解析:MedPortal Ontobee
Relations Ontology ( RO )
缩写: RO 语言: English OBO Foundry: 否描述: Relationship types shared across multiple ontologies. 解析:MedPortal Ontobee
Semanticscience Integrated Ontology ( SIO )
缩写: SIO 语言: English OBO Foundry: 否描述: The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects. 解析:MedPortal
Sequence types and features ( SO )
缩写: SO 语言: English OBO Foundry: 否描述: A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases. 解析:MedPortal Ontobee
Uberon multi-species anatomy ontology ( UBERON )
缩写: UBERON 语言: English OBO Foundry: 否描述: An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies. 解析:MedPortal Ontobee
Vaccine Ontology ( VO )
缩写: VO 语言: English OBO Foundry: 否描述: a biomedical ontology in the domain of vaccine and vaccination. 解析:Ontobee